PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678362210
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family SRS
Protein Properties Length: 342aa    MW: 36200 Da    PI: 6.7735
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678362210genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702210.73.5e-651172833153
     DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrel............kskk 82 
                 g++sCqdCGnqakkdCah+RCRtCCksrgf+C+thvkstWvpaa rrerq+  a +++ +++++             k+++++            ++++
  678362210 117 GGGISCQDCGNQAKKDCAHMRCRTCCKSRGFQCQTHVKSTWVPAAVRRERQHSRAVMQHPDQRRSsgggdgntP----KDQNKTpllqvssdnnnnNITN 212
                5789***********************************************99999988877766778753331....3333323333222222112233 PP

     DUF702  83 qsalsstklssaeskkeletss........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                 s+ +s+    a+        +        +P+evs eavfrcvrv++vdd+e++l+Yqtav+i GhvfkG+LydqG+e
  678362210 213 PSSNNSSVARVAT--------HmtglelgsFPPEVSLEAVFRCVRVTAVDDSEDQLGYQTAVNICGHVFKGVLYDQGVE 283
                3333333333333........145555555***********************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051427.1E-62119283IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.3E-27121163IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016249.1E-25235282IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MADFFTLGNG VVGVGTGNAS LDQDRSAEIN PESWFLFRNE AENHHPPQHV HKGFELWPPP  60
AQAQAHNFLQ VQGGPTLHDL YASAGGLGVG RGCFSISGGG DASPRSGGFL MMRSSGGGGI  120
SCQDCGNQAK KDCAHMRCRT CCKSRGFQCQ THVKSTWVPA AVRRERQHSR AVMQHPDQRR  180
SSGGGDGNTP KDQNKTPLLQ VSSDNNNNNI TNPSSNNSSV ARVATHMTGL ELGSFPPEVS  240
LEAVFRCVRV TAVDDSEDQL GYQTAVNICG HVFKGVLYDQ GVEGETSSGG GSVTAQPLNL  300
ITGATATSTE ANGSSPFLDP CLYSAPISNF INGTQFFPPS TS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100954.11e-100PREDICTED: protein SHORT INTERNODES
TrEMBLS8C9901e-111S8C990_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67824110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.13e-66Lateral root primordium (LRP) protein-related